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bcftools-merge
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bcftools-merge is used to merge VCF files into a singe VCF.
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bcftools-merge/README.md

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Usage

$ open-choppy-env $ choppy install …

inputSamplesFile

sample_id tumor_fastq_1 tumor_fastq_2 normal_fastq_1 normal_fastq_1

inputSamplesFile is in the form of tsv, and should be put into Aliyun OSS.