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| ***After generating all VCF files you want to include in the panel,*** | ***After generating all VCF files you want to include in the panel,*** | ||||
| ***you can use bcftools-merge to merge them into a single Panel of Normal VCF.*** | ***you can use bcftools-merge to merge them into a single Panel of Normal VCF.*** | ||||
| #### Usage | #### Usage | ||||
| ```shell | |||||
| ```bash | |||||
| # Enter the Choppy work environment | # Enter the Choppy work environment | ||||
| open-choppy-env | open-choppy-env | ||||
| # APP `bcftools-merge` should be installed for the first time | |||||
| # App `bcftools-merge` should be installed for the first time | |||||
| choppy install YaqingLiu/bcftools-merge | choppy install YaqingLiu/bcftools-merge | ||||
| # Create input file `samples.json` | # Create input file `samples.json` | ||||
| touch samples.json | touch samples.json |
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