1 измењених фајлова са 3 додато и 3 уклоњено
+ 3
- 3
tasks/bcftools.wdl
Прегледај датотеку
| mkdir -p /cromwell_root/tmp/bcftools/ | mkdir -p /cromwell_root/tmp/bcftools/ | ||||
| bcftools view ${pon_vcf1} -Oz -o /cromwell_root/tmp/bcftools/$(basename $pon_vcf1).gz | |||||
| bcftools view ${pon_vcf2} -Oz -o /cromwell_root/tmp/bcftools/$(basename $pon_vcf2).gz | |||||
| bcftools view ${pon_vcf3} -Oz -o /cromwell_root/tmp/bcftools/$(basename $pon_vcf3).gz | |||||
| bcftools view ${pon_vcf1} -Oz -o /cromwell_root/tmp/bcftools/$(basename ${pon_vcf1}.gz) | |||||
| bcftools view ${pon_vcf2} -Oz -o /cromwell_root/tmp/bcftools/$(basename ${pon_vcf1}.gz) | |||||
| bcftools view ${pon_vcf3} -Oz -o /cromwell_root/tmp/bcftools/$(basename ${pon_vcf1}.gz) | |||||
| cd /cromwell_root/tmp/bcftools | cd /cromwell_root/tmp/bcftools | ||||
| bcftools index FUSCCTNBC083_pon.vcf.gz | bcftools index FUSCCTNBC083_pon.vcf.gz |
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