first commit

tasks/bcftools.wdl

@@ -25,7 +25,8 @@ task bcftools {
 			#for i in `ls *.gz`; do bcftools index $i -f; done
 			#bcftools merge -m all -f PASS,. --force-samples *.vcf.gz | bcftools plugin fill-AN-AC | bcftools filter -i 'SUM(AC)>1' > panel_of_normal.vcf
 		else
-			touch panel_of_normal.vcf
+			echo 1
+			#touch panel_of_normal.vcf
 		fi
 	>>>