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tasks/bcftools.wdl
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| @@ -19,7 +19,7 @@ task bcftools { | |||
| bcftools view ${pon_vcf2} -Oz -o /cromwell_root/tmp/bcftools/$(basename ${pon_vcf1}.gz) | |||
| bcftools view ${pon_vcf3} -Oz -o /cromwell_root/tmp/bcftools/$(basename ${pon_vcf1}.gz) | |||
| cd /cromwell_root/tmp/bcftools | |||
| for i in ${sep=" " *.vcf.gz} | |||
| for i in `ls *.gz` | |||
| do | |||
| bcftools index $i | |||
| done | |||
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