bcftools-merge is used to merge VCF files into a singe VCF.
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workflow.wdl 304B

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  1. import "./tasks/bcftools.wdl" as bcftools
  2. workflow {{ project_name }} {
  3. String bcftools_docker
  4. String disk_size
  5. String cluster_config
  6. Array[File] BCF
  7. call bcftools.bcftools as bcftools {
  8. input:
  9. bcfpon=BCF,
  10. docker=bcftools_docker,
  11. disk_size=disk_size,
  12. cluster_config=cluster_config
  13. }
  14. }