fix bug

tasks/bamdst.wdl

@@ -11,9 +11,7 @@ task bamdst {
     command <<<
         set -o pipefail
         set -e
-        mkdir -p /cromwell_root/tmp/bamdst/
-        /bamdst/bamdst -p ${bed} -o /cromwell_root/tmp/bamdst/ ${bam}
-        cd /cromwell_root/tmp/bamdst/
+        /bamdst/bamdst -p ${bed} -o ./ ${bam}
         cp chromosomes.report ${sample}_chromosomes.report
         cp coverage.report ${sample}_coverage.report
         cp depth_distribution.plot ${sample}_depth_distribution.plot
@@ -37,5 +35,12 @@ task bamdst {
         File insertsize_plot = "${sample}_insertsize.plot"
         File region_tsv_gz = "${sample}_region.tsv.gz"
         File uncover_bed = "${sample}_uncover.bed"
+        File chromosomes_report1 = "chromosomes.report"
+        File coverage_report1 = "coverage.report"
+        File depth_distribution_plot1 = "depth_distribution.plot"
+        File depth_tsv_gz1 = "depth.tsv.gz"
+        File insertsize_plot1 = "insertsize.plot"
+        File region_tsv_gz1 = "region.tsv.gz"
+        File uncover_bed1 = "uncover.bed"
     }
 }