fix bug

workflow.wdl

@@ -177,16 +177,8 @@ workflow {{ project_name }} {
 			disk_size=disk_size,
 			cluster_config=cluster_config
 		}
-		File bam_to_use = corealigner.corealigner_bam
 	}
-
-	if (type == "tumor" && !defined(normal_recaled_bam)) {
-		File bam_to_use = BQSR.recaled_bam
-	}	
-
-	#File bam_to_use = select_first([corealigner.corealigner_bam, BQSR.recaled_bam])
-
-
+	
 	call TNseq.TNseq as TNseq {
 		input:
 		SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR,