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workflow.wdl
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| if (type == "tumor") { | if (type == "tumor") { | ||||
| call TNseq.TNseq as TNseq { | call TNseq.TNseq as TNseq { | ||||
| input: | input: | ||||
| TN=TN, | |||||
| SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | ||||
| SENTIEON_LICENSE=SENTIEON_LICENSE, | SENTIEON_LICENSE=SENTIEON_LICENSE, | ||||
| fasta=fasta, | fasta=fasta, | ||||
| call TNscope.TNscope as TNscope { | call TNscope.TNscope as TNscope { | ||||
| input: | input: | ||||
| TN=TN, | |||||
| SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | SENTIEON_INSTALL_DIR=SENTIEON_INSTALL_DIR, | ||||
| SENTIEON_LICENSE=SENTIEON_LICENSE, | SENTIEON_LICENSE=SENTIEON_LICENSE, | ||||
| fasta=fasta, | fasta=fasta, |
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