Varscan2/inputs

{
  "{{ project_name }}.sample_id": "{{ sample_id }}",
  "{{ project_name }}.normal_recaled_bam": "{{ normal_recaled_bam }}",
  "{{ project_name }}.tumor_recaled_bam": "{{ tumor_recaled_bam }}",
  "{{ project_name }}.normal_recaled_bam_index": "{{ normal_recaled_bam_index }}",
  "{{ project_name }}.tumor_recaled_bam_index": "{{ tumor_recaled_bam_index }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.varscan_docker": "{{ varscan_docker }}",
  "{{ project_name }}.annovar_docker": "{{ annovar_docker }}",
  "{{ project_name }}.maftools_docker": "{{ maftools_docker }}",
  "{{ project_name }}.database": "{{ database }}",
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}"
}