VEP/inputs

{
  "{{ project_name }}.vcf": "{{ vcf }}",
  "{{ project_name }}.sample_id": "{{ sample_id }}",
  "{{ project_name }}.tumor_id": "{{ tumor_id }}",
  "{{ project_name }}.normal_id": "{{ normal_id }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.vep_path": "{{ vep_path }}",
  "{{ project_name }}.cache": "{{ cache }}",
  "{{ project_name }}.ncbi_build": "{{ ncbi_build }}",
  "{{ project_name }}.species": "{{ species }}",
  "{{ project_name }}.only_pass": {{ only_pass | tojson }},
  "{{ project_name }}.vcf2maf_path": "{{ vcf2maf_path }}",
  "{{ project_name }}.vep_docker": "{{ vep_docker }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}"
}