test

tasks/VEP.wdl

@@ -56,7 +56,7 @@ task VEP {
 
     # vcf2maf
     perl ${vcf2maf_path}/vcf2maf.pl \
-    --inhibit-vep
+    --inhibit-vep \
     --input-vcf ${basename}.vep.vcf --output-maf ${basename}.maf \
     --tumor-id ${tumor_id} --normal-id ${normal_id} \
     --ref-fasta ${ref_dir}/${fasta} \