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tasks/VEP.wdl
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| nt=$(nproc) | nt=$(nproc) | ||||
| source /etc/profile | source /etc/profile | ||||
| echo ${sample_id} | |||||
| echo ${basename} | |||||
| #awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${vcf} > ${sample_id}.vcf | #awk -F'\t' '{if(($1~"^#")||($1!~"^#" && $7=="PASS")){print $0}}' ${vcf} > ${sample_id}.vcf | ||||
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