Update: VEP parameter · 62c91fcaac - Choppy for Reproducible Omics Pipeline

Update: VEP parameter

master

YaqingLiu 3 years ago

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3ef12a3dd1

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62c91fcaac

1 changed files with 2 additions and 0 deletions

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tasks/VEP.wdlView File
								
															    --input-vcf ${basename}.PASS.vep.vcf --output-maf ${basename}.PASS.maf \
															
															    --input-vcf ${basename}.PASS.vep.vcf --output-maf ${basename}.PASS.maf \
														
															    $vcf2maf_ID \
															
															    $vcf2maf_ID \
														
															    --ref-fasta ${ref_dir}/${fasta} \
															
															    --ref-fasta ${ref_dir}/${fasta} \
														
															    --ncbi-build ${ncbi_build} \
														
															    --species ${species} \
														
															    --vep-fork $nt
															
															    --vep-fork $nt
														
															  >>>
															
															  >>>