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tasks/DownSample.wdl
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| set -e | set -e | ||||
| nt=$(nproc) | nt=$(nproc) | ||||
| if [ ${p} ]; then | if [ ${p} ]; then | ||||
| seqkit sample --two-pass --threads ${nt} -s 100 -p ${p} ${fastq} -o ${sample_id}.fastq.gz | |||||
| seqkit sample --two-pass --threads $nt -s 100 -p ${p} ${fastq} -o ${sample_id}.fastq.gz | |||||
| else | else | ||||
| seqkit sample --two-pass --threads ${nt} -s 100 -n ${n} ${fastq} -o ${sample_id}.fastq.gz | |||||
| seqkit sample --two-pass --threads $nt -s 100 -n ${n} ${fastq} -o ${sample_id}.fastq.gz | |||||
| fi | fi | ||||
| >>> | >>> | ||||
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