PoN/inputs

{
  "{{ project_name }}.sample_id": "{{ sample_id }}",
  "{{ project_name }}.deduped_bam": "{{ deduped_bam }}",
  "{{ project_name }}.deduped_bam_index": "{{ deduped_bam_index }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "{{ SENTIEON_INSTALL_DIR }}",
  "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.sentieon_docker": "{{ sentieon_docker }}",
  "{{ project_name }}.regions": "{{ regions }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.cluster_config": "{{ cluster_config }}"
}


sample_id,recaled_bam,recaled_bam_index
CBCGA269277,oss://choppy-cromwell-result/test-choppy/PoN_test/0cb8780d-42f4-45d7-b36c-a8aaf6767eb2/call-BQSR/CBCGA269277_normal.sorted.deduped.realigned.recaled.bam,oss://choppy-cromwell-result/test-choppy/PoN_test/0cb8780d-42f4-45d7-b36c-a8aaf6767eb2/call-BQSR/CBCGA269277_normal.sorted.deduped.realigned.recaled.bam.bai