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PoN
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Generate the Panel of Normal files for TNseq and TNscope.
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PoN/samples.json

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  1. {

  2.     "normal_recaled_bam_bai": [

  3.     ["CBCGA372775_tumor", "oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA372775_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA372775_tumor.sorted.deduped.bam.bai"],

  4.     ["CBCGA380400_tumor","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA380400_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA380400_tumor.sorted.deduped.bam.bai"],

  5.     ["CBCGA382368_tumor","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA382368_tumor.sorted.deduped.bam","oss://pgx-result/liuyaqing/CBCGA/dedup/CBCGA382368_tumor.sorted.deduped.bam.bai"]

  6.     ],

  7.     "panel_id": "PON_20210407_test",

  8.     "sample_id": "PON_20210407_test"

  9. }