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workflow.wdl
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| @@ -61,8 +61,8 @@ workflow {{ project_name }} { | |||
| SENTIEON_LICENSE=SENTIEON_LICENSE, | |||
| fasta=fasta, | |||
| ref_dir=ref_dir, | |||
| deduped_bam=fastq_Dedup.realigner_bam, | |||
| deduped_bam_index=fastq_Dedup.realigner_bam_index, | |||
| deduped_bam=fastq_Dedup.deduped_bam, | |||
| deduped_bam_index=fastq_Dedup.deduped_bam_index, | |||
| db_mills=db_mills, | |||
| dbmills_dir=dbmills_dir, | |||
| dbsnp=dbsnp, | |||
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