ANNOVAR/README.md

ANNOVAR

This APP developed for the annotation of VCF files.

The version can be set by changing the parameter hg. Note that the path to the database is also need to be modified.

Getting Started

We recommend using choppy system and Aliyun OSS service. The command will look like this:

# Activate the choppy environment
$ open-choppy-env

# Install the APP
$ choppy install YaqingLiu/annovar [-f]

# List the parameters
$ choppy samples YaqingLiu/annovar-latest [--no-default]

# Submit you task with the `samples.csv file` and `project name`
$ choppy batch YaqingLiu/annovar-latest samples.csv -p Project [-l project:Label]

# Query the status of all tasks in the project
$ choppy query -L project:Label | grep "status"