ANNOVAR/README.md

### ANNOVAR
This APP developed for the annotation of VCF files.

The version can be set by changing the parameter `hg`. Note that the path to the database is also need to be modified.
### Getting Started

We recommend using choppy system and Aliyun OSS service. The command will look like this:

```
# Activate the choppy environment
$ open-choppy-env

# Install the APP
$ choppy install YaqingLiu/annovar [-f]

# List the parameters
$ choppy samples YaqingLiu/annovar-latest [--no-default]

# Submit you task with the `samples.csv file` and `project name`
$ choppy batch YaqingLiu/annovar-latest samples.csv -p Project [-l project:Label]

# Query the status of all tasks in the project
$ choppy query -L project:Label | grep "status"
```