Choppy for Reproducible Omics Pipeline

A painless, self-hosted Git service

Easy to use

You can find the Choppy App you need from the Choppy Store and install it in your local environment. Prepare a samples file with an Excel spreadsheet to start a journey of pipeline analysis.


Any platform that supports both Python2 and Python3 languages can run Choppy, including Windows, Mac, and Linux. Pick one you like! But we recommend using a cloud environment, such as the Alibaba Cloud platform we currently support.


Choppy uses a variety of technologies to ensure the reliability and repeatability of user-generated Pipeline analysis. For example: Docker, Git, object storage, WDL, etc.

Open Source and Standardization

All code is open source at GitHub and Choppy, join us to develop this project together! What are you waiting for? Become a contributor!