1 changed files with 6 additions and 3 deletions
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README.md
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| ```shell | ```shell | ||||
| Rscript RNAseq_1_ballgown.R -i ./ballgown/ | Rscript RNAseq_1_ballgown.R -i ./ballgown/ | ||||
| Rscript RNAseq_2_pca.R -i ballgown_geneexp_log2fpkm_floor0p01_c3r58395_2019-04-29.txt -g summary_group.txt | |||||
| Rscript RNAseq_3_cor.R -o -i ballgown_geneexp_log2fpkm_floor0p01_c3r58395_2019-04-29.txt -g group2.txt | |||||
| Rscript RNAseq_2_pca.R -i rnaseq_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g summary_group.txt | |||||
| Rscript RNAseq_3_cor.R -o -i rnaseq_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g summary_group.txt | |||||
| Rscript RNAseq_4_pwDEG.R -i rnaseq_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g summary_group.txt -a TRUE -b TRUE -f -4.05 | |||||
| Rscript RNAseq_5_pwGSEA.R -i rnaseq_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g summary_group.txt | |||||
| Rscript RNAseq_6_enrichfunc.R -i rnaseq_degs_acrossgroups.csv | |||||
| ``` | ``` | ||||
| ### 运行示例 | ### 运行示例 | ||||
| ```shell | ```shell | ||||
| Rscript RNAseq_5_pwGSEA.R -o /home/yuying/rnaseqreport_test -i example_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g group13_1.txt | |||||
| Rscript RNAseq_5_pwGSEA.R -o /home/yuying/rnaseqreport_test -i example_geneexp_log2fpkm_floor0p01_c13r58395_2019-04-30.txt -g group13_1.txt | |||||
| ``` | ``` | ||||
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