1 changed files with 1 additions and 4 deletions
+ 1
- 4
RNAseq_1_expr_ballgown.R
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| message("Write log2 expression file\n") | message("Write log2 expression file\n") | ||||
| write.table(logexpr_out,file =file = paste(out_dir,opt$project_code,"_geneexp_log2FPKM.txt",sep=""),sep="\t",row.names=F,quote=F) | |||||
| write.table(logexpr_out,file = paste(out_dir,opt$project_code,"_geneexp_log2FPKM.txt",sep=""),sep="\t",row.names=F,quote=F) | |||||
| }else{ | }else{ | ||||
| #output expression file with fpkm | #output expression file with fpkm | ||||
| write.table(expr,file = paste(out_dir,opt$project_code,"_geneexp_FPKM.txt",sep=""),sep="\t",row.names=F,quote=F) | write.table(expr,file = paste(out_dir,opt$project_code,"_geneexp_FPKM.txt",sep=""),sep="\t",row.names=F,quote=F) | ||||
| } | } | ||||
| write.table(expr_fpkm_out,file = paste(out_dir,opt$project_code,"_geneexp_FPKM.txt",sep=""),sep="\t",row.names=F,quote=F) | |||||
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