Du kan inte välja fler än 25 ämnen
Ämnen måste starta med en bokstav eller siffra, kan innehålla bindestreck ('-') och vara max 35 tecken långa.
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- task general {
-
- File input_file
- File output_dir
-
- command <<<
- set -o pipefail
- set -e
- maftools -p general_non_parameter ${output_dir} ${input_file}
- >>>
-
- runtime {
- docker:docker
- cluster: cluster_config
- systemDisk: "cloud_ssd 40"
- }
-
- output {
- File file_summary = "${output_dir}/MAF_summary.png"
- File file_oncoplot = "${output_dir}/Oncoplot.png"
- File file_tt = "${output_dir}/Transition_and_transversion.png.png"
- File file_rainfall = "${output_dir}/Rainfall.png"
- File file_genecloud = "${output_dir}/Genecloud.png"
- File file_interaction = "$output_dir}/Drug_gene_interaction.png"
- File file_pathway = "${output_dir}/Oncogenic_signaling_pathways.png"
- }
- }
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