quartet-rnaseq-report/src/tservice/plugins/quartet_rnaseq_report/util.clj

(ns tservice.plugins.quartet-rnaseq-report.util
  (:require [clj-yaml.core :as yaml]))

(defn gen-multiqc-config
  [config-file]
  (let [config (yaml/generate-string
                {:run_modules ["rnaseq_data_generation_information"
                               "rnaseq_performance_assessment"
                               "rnaseq_raw_qc"
                               "rnaseq_post_alignment_qc"
                               "rnaseq_quantification_qc"
                               "rnaseq_supplementary"]
                 :skip_generalstats true}
                :dumper-options {:flow-style :block})]
    (spit config-file config)))