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[Fix Bug] Wrong template in multiqc.

tags/v0.1.4
YJC 3 years ago
parent
commit
55c70eb9cc
1 changed files with 2 additions and 4 deletions
  1. +2
    -4
      src/tservice/plugins/quartet_rnaseq_report.clj

+ 2
- 4
src/tservice/plugins/quartet_rnaseq_report.clj View File

config-path (fs-lib/join-paths dest-dir "results", "quartet_rnaseq_report.yaml")] config-path (fs-lib/join-paths dest-dir "results", "quartet_rnaseq_report.yaml")]
(try (try
(fs-lib/create-directories! result-dir) (fs-lib/create-directories! result-dir)
(log/info "Merge these files")
(log/info "Merge gene experiment files from ballgown directory to a experiment table: " ballgown-dir exp-fpkm-filepath) (log/info "Merge gene experiment files from ballgown directory to a experiment table: " ballgown-dir exp-fpkm-filepath)
(log/info "Merge these files")
(log/info "Merge gene experiment files from count directory to a experiment table: " count-dir exp-count-filepath) (log/info "Merge gene experiment files from count directory to a experiment table: " count-dir exp-count-filepath)
(filter-mkdir-copy datadir [".*call-ballgown/.*.txt"] dest-dir "ballgown") (filter-mkdir-copy datadir [".*call-ballgown/.*.txt"] dest-dir "ballgown")
(filter-mkdir-copy datadir [".*call-count/.*gene_count_matrix.csv"] dest-dir "count") (filter-mkdir-copy datadir [".*call-count/.*gene_count_matrix.csv"] dest-dir "count")
(fn [] (fn []
(update-process! task-id 80) (update-process! task-id 80)
(mq/multiqc result-dir dest-dir {:config config-path (mq/multiqc result-dir dest-dir {:config config-path
:template "default"
:template "quartet_rnaseq_report"
:title "Quartet RNA report" :title "Quartet RNA report"
:env {:PATH (add-env-to-path "quartet-metqc-report")}}))]
:env {:PATH (add-env-to-path "quartet-rnaseq-report")}}))]
(fn [result] (= (:status result) "Success"))) (fn [result] (= (:status result) "Success")))
status (:status (last results)) status (:status (last results))
msg (apply str (map :msg results)) msg (apply str (map :msg results))

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