add manifest.json schema.json

manifest.json

@@ -0,0 +1,20 @@
+{
+  "name": "Extracellular Small RNA Profiling",
+  "short_name": "exceRptSmallRNA",
+  "description": "Extracellular small RNA pipeline using exceRpt",
+  "home": "http://choppy.3steps.cn/chenziyin/exceRptSmallRNA",
+  "hidden": false,
+  "icons": [{
+      "src": "",
+      "type": "image/png",
+      "sizes": "192x192"
+    },
+    {
+      "src": "",
+      "type": "image/png",
+      "sizes": "192x192"
+    }
+  ],
+  "category": "Pipeline",
+  "source": "PGx"
+}

schema.json

@@ -0,0 +1,87 @@
+{
+    "formMode": "batch",
+    "fields": [{
+            "tmplType": "sample_id",
+            "type": "number",
+            "label": "Sample ID",
+            "name": "sample_id",
+            "question": "How many samples? For auto generating sample id.",
+            "placeholder": "How many samples? For auto generating sample id.",
+            "model": "sample_id",
+            "disabled": false,
+            "min": 1,
+            "max": 100,
+            "config": {
+                "rules": [{
+                    "type": "number",
+                    "required": true,
+                    "message": "Please input a number."
+                }]
+            }
+        },
+        {
+            "tmplType": "file",
+            "label": "Read1 Files",
+            "model": "raw_fastq",
+            "name": "raw_fastq",
+            "readOnly": false,
+            "multiple": true,
+            "filterType": "fastq|fastq.gz|fq|fq.gz",
+            "placeholder": "Select files for read1.",
+            "config": {
+                "rules": [{
+                    "type": "array",
+                    "required": true,
+                    "message": "Please select files for read1."
+                }]
+            }
+        },
+        {
+            "tmplType": "input",
+            "type": "string",
+            "label": "Adapter Seq",
+            "name": "adapter_seq",
+            "placeholder": "Please enter adapter sequence.",
+            "model": "adapter_seq",
+            "config": {
+                "initialValue": "none",
+                "rules": [{
+                    "type": "string",
+                    "required": true,
+                    "message": "Please enter adapter sequence."
+                }]
+            }
+        },
+        {
+            "tmplType": "input",
+            "type": "number",
+            "label": "RandomBase In Adapter",
+            "name": "randomBase_in_adapter",
+            "placeholder": "Identify and remove random barcodes of this number of nucleotides.",
+            "model": "randomBase_in_adapter",
+            "config": {
+                "initialValue": 0,
+                "rules": [{
+                    "type": "number",
+                    "required": true,
+                    "message": "Please input a number."
+                }]
+            }
+        },
+        {
+            "tmplType": "actions",
+            "buttons": [{
+                    "type": "cancel",
+                    "buttonType": "default",
+                    "buttonLabel": "Previous Step"
+                },
+                {
+                    "type": "submit",
+                    "buttonType": "primary",
+                    "buttonLabel": "Next Step",
+                    "validate": true
+                }
+            ]
+        }
+    ]
+}