sort number file · 745040715f - Choppy for Reproducible Omics Pipeline

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LUYAO REN 5 years ago

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97f9ad12dd

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745040715f

1 changed files with 1 additions and 1 deletions

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tasks/split_gvcf_files.wdlView File
								
																	for i in {10..133};  do  cat ${gvcf}| cut -f1-9,$i > $i.splited.vcf; done
															
																	for i in {10..133};  do  cat ${gvcf}| cut -f1-9,$i > $i.splited.vcf; done
														
																	ls *splited.vcf | paste - name > rename
															
																	ls *splited.vcf | sort -n | paste - name > rename
														
																	cat rename | while read a b; do mv $a $b.${chromo}.vcf; done
															
																	cat rename | while read a b; do mv $a $b.${chromo}.vcf; done