renluyao
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repeat_validation
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repeat_validation/inputs

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  1. {

  2.   "{{ project_name }}.satellite": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Satellite.3.bed",

  3.   "{{ project_name }}.mhc": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/mhc.hg38.bed",

  4.   "{{ project_name }}.disk_size": "100",

  5.   "{{ project_name }}.vcf_idx": "{{ vcf_idx }}",

  6.   "{{ project_name }}.SINE": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/SINE.3.bed",

  7.   "{{ project_name }}.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",

  8.   "{{ project_name }}.sample_name": "{{ sample_name }}",

  9.   "{{ project_name }}.del_breakpoint": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Tier1.del.breakpoint",

  10.   "{{ project_name }}.ins_breakpoint": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Tier1.ins.breakpoint",

  11.   "{{ project_name }}.LINE": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/LINE.3.bed",

  12.   "{{ project_name }}.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  13.   "{{ project_name }}.LTR": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/LTR.3.bed",

  14.   "{{ project_name }}.simple_repeat": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/simple_repeat.3.bed",

  15.   "{{ project_name }}.vcf": "{{ vcf }}",

  16.   "{{ project_name }}.confidence_bed": "oss://pgx-result/renluyao/manuscript_v3.0/reference_dataset_v202011/Quartet.callable.voted.collapse.bed",

  17.   "{{ project_name }}.low_complexity": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Low_complexity.3.bed",

  18.   "{{ project_name }}.SD": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/hg38_SD_merge.chr1-22X.bed"

  19. }