LUYAO REN
4 anos atrás
1 arquivos alterados com 10 adições e 10 exclusões
+ 10
- 10
tasks/validation.wdl
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| rtg vcfeval -b ${D5_10X} -c ${sample_name}.${tag}.mhc.vcf.gz -o ${sample_name}.${tag}.mhc -t ${sdf} | rtg vcfeval -b ${D5_10X} -c ${sample_name}.${tag}.mhc.vcf.gz -o ${sample_name}.${tag}.mhc -t ${sdf} | ||||
| cp ${sample_name}.${tag}.satellite/summary.txt > ${sample_name}.${tag}.satellite.summary.txt | |||||
| cp ${sample_name}.${tag}.simple_repeat/summary.txt > ${sample_name}.${tag}.simple_repeat.summary.txt | |||||
| cp ${sample_name}.${tag}.SINE/summary.txt > ${sample_name}.${tag}.SINE.summary.txt | |||||
| cp ${sample_name}.${tag}.LINE/summary.txt > ${sample_name}.${tag}.LINE.summary.txt | |||||
| cp ${sample_name}.${tag}.LTR/summary.txt > ${sample_name}.${tag}.LTR.summary.txt | |||||
| cp ${sample_name}.${tag}.low_complexity/summary.txt > ${sample_name}.${tag}.low_complexity.summary.txt | |||||
| cp ${sample_name}.${tag}.SD/summary.txt > ${sample_name}.${tag}.SD.summary.txt | |||||
| cp ${sample_name}.${tag}.ins_breakpoint/summary.txt > ${sample_name}.${tag}.ins_breakpoint.summary.txt | |||||
| cp ${sample_name}.${tag}.del_breakpoint/summary.txt > ${sample_name}.${tag}.del_breakpoint.summary.txt | |||||
| cp ${sample_name}.${tag}.mhc/summary.txt > ${sample_name}.${tag}.mhc.summary.txt | |||||
| cat ${sample_name}.${tag}.satellite/summary.txt > ${sample_name}.${tag}.satellite.summary.txt | |||||
| cat ${sample_name}.${tag}.simple_repeat/summary.txt > ${sample_name}.${tag}.simple_repeat.summary.txt | |||||
| cat ${sample_name}.${tag}.SINE/summary.txt > ${sample_name}.${tag}.SINE.summary.txt | |||||
| cat ${sample_name}.${tag}.LINE/summary.txt > ${sample_name}.${tag}.LINE.summary.txt | |||||
| cat ${sample_name}.${tag}.LTR/summary.txt > ${sample_name}.${tag}.LTR.summary.txt | |||||
| cat ${sample_name}.${tag}.low_complexity/summary.txt > ${sample_name}.${tag}.low_complexity.summary.txt | |||||
| cat ${sample_name}.${tag}.SD/summary.txt > ${sample_name}.${tag}.SD.summary.txt | |||||
| cat ${sample_name}.${tag}.ins_breakpoint/summary.txt > ${sample_name}.${tag}.ins_breakpoint.summary.txt | |||||
| cat ${sample_name}.${tag}.del_breakpoint/summary.txt > ${sample_name}.${tag}.del_breakpoint.summary.txt | |||||
| cat ${sample_name}.${tag}.mhc/summary.txt > ${sample_name}.${tag}.mhc.summary.txt | |||||
| >>> | >>> |
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