repeat_validation/inputs

{
  "{{ project_name }}.satellite": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Satellite.3.bed",
  "{{ project_name }}.D5_10X": "oss://pgx-result/renluyao/manuscript_v3.0/10X/LCL5_10X.vcf.gz",
  "{{ project_name }}.mhc": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/mhc.hg38.bed",
  "{{ project_name }}.disk_size": "100",
  "{{ project_name }}.vcf_idx": "{{ vcf_idx }}",
  "{{ project_name }}.SINE": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/SINE.3.bed",
  "{{ project_name }}.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",
  "{{ project_name }}.sample_name": "{{ sample_name }}",
  "{{ project_name }}.del_breakpoint": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Tier1.del.breakpoint",
  "{{ project_name }}.ins_breakpoint": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Tier1.ins.breakpoint",
  "{{ project_name }}.sdf": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.sdf/",
  "{{ project_name }}.LINE": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/LINE.3.bed",
  "{{ project_name }}.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
  "{{ project_name }}.LTR": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/LTR.3.bed",
  "{{ project_name }}.simple_repeat": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/simple_repeat.3.bed",
  "{{ project_name }}.D5_10X_idx": "oss://pgx-result/renluyao/manuscript_v3.0/10X/LCL5_10X.vcf.gz.tbi",
  "{{ project_name }}.vcf": "{{ vcf }}",
  "{{ project_name }}.confidence_bed": "oss://pgx-result/renluyao/manuscript_v3.0/reference_dataset_v202011/Quartet.callable.voted.collapse.bed",
  "{{ project_name }}.low_complexity": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/Low_complexity.3.bed",
  "{{ project_name }}.SD": "oss://pgx-result/renluyao/manuscript_v3.0/difficult_region/hg38_SD_merge.chr1-22X.bed"
}