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raw_bam_qc
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raw_bam_qc/inputs

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  1. {

  2.   "{{ project_name }}.benchmarking_dir": "oss://pgx-result/renluyao/high_confidence_call/20200125_high_confidence_call_33vcf_final/",

  3.   "{{ project_name }}.vcfstat.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  4.   "{{ project_name }}.qualimap.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  5.   "{{ project_name }}.qualimap.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  6.   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  7.   "{{ project_name }}.fastqc.disk_size": "150",

  8.   "{{ project_name }}.mergeSentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",

  9.   "{{ project_name }}.benchmark.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  10.   "{{ project_name }}.sentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",

  11.   "{{ project_name }}.fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  12.   "{{ project_name }}.fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  13.   "{{ project_name }}.benchmark.disk_size": "150",

  14.   "{{ project_name }}.vcfstat.disk_size": "100",

  15.   "{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",

  16.   "{{ project_name }}.sentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  17.   "{{ project_name }}.benchmark.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  18.   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  19.   "{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  20.   "{{ project_name }}.mergeNum.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",

  21.   "{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  22.   "{{ project_name }}.mergeNum.disk_size": "100",

  23.   "{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  24.   "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  25.   "{{ project_name }}.qualimap.disk_size": "500",

  26.   "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

  27.   "{{ project_name }}.mergeNum.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  28.   "{{ project_name }}.mergeSentieon.disk_size": "100",

  29.   "{{ project_name }}.sentieon.disk_size": "100",

  30.   "{{ project_name }}.vcfstat.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  31.   "{{ project_name }}.mergeSentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  32.   "{{ project_name }}.fastqscreen.disk_size": "100",

  33.   "{{ project_name }}.multiqc.disk_size": "100",

  34.   "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

  35. }