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raw_bam_qc
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10 Commits
2 Ramas
Rama: master
Ramas Etiquetas
${ item.name }
Crear rama ${ searchTerm }
desde 'master'
${ noResults }
raw_bam_qc/inputs

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  1. {

  2.   "{{ project_name }}.qualimap.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",

  3.   "{{ project_name }}.qualimap.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",

  4.   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  5.   "{{ project_name }}.fastqc.disk_size": "150",

  6.   "{{ project_name }}.mergeSentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",

  7.   "{{ project_name }}.sentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",

  8.   "{{ project_name }}.fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  9.   "{{ project_name }}.fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  10.   "{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",

  11.   "{{ project_name }}.sentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  12.   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",

  13.   "{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",

  14.   "{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",

  15.   "{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",

  16.   "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",

  17.   "{{ project_name }}.qualimap.disk_size": "500",

  18.   "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",

  19.   "{{ project_name }}.mergeSentieon.disk_size": "100",

  20.   "{{ project_name }}.sentieon.disk_size": "100",

  21.   "{{ project_name }}.mergeSentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",

  22.   "{{ project_name }}.fastqscreen.disk_size": "100",

  23.   "{{ project_name }}.multiqc.disk_size": "100",

  24.   "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"

  25. }