sentieon

inputs

 {
-  "{{ project_name }}.benchmarking_dir": "oss://chinese-quartet/quartet-result-data/NCTR_benchmarking_20181215/",
+  "{{ project_name }}.benchmarking_dir": "oss://pgx-result/renluyao/high_confidence_call/20200125_high_confidence_call_33vcf_final/",
   "{{ project_name }}.vcfstat.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
+  "{{ project_name }}.qualimap.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
+  "{{ project_name }}.qualimap.cluster_config": "OnDemand bcs.a2.7xlarge img-ubuntu-vpc",
   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",
   "{{ project_name }}.fastqc.disk_size": "150",
-  "{{ project_name }}.benchmark.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
-  "{{ project_name }}.mergeJI.disk_size": "100",
-  "{{ project_name }}.fastqscreen.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
-  "{{ project_name }}.fastqc.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
-  "{{ project_name }}.inputJIpiarsFile": "{{ inputJIpiarsFile }}",
+  "{{ project_name }}.mergeSentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
+  "{{ project_name }}.benchmark.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+  "{{ project_name }}.sentieon.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
+  "{{ project_name }}.fastqscreen.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+  "{{ project_name }}.fastqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
   "{{ project_name }}.benchmark.disk_size": "150",
   "{{ project_name }}.vcfstat.disk_size": "100",
   "{{ project_name }}.fastqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqc:v0.11.5",
-  "{{ project_name }}.mergeJI.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-tools:latest",
+  "{{ project_name }}.sentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
   "{{ project_name }}.benchmark.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
   "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
-  "{{ project_name }}.mergeJI.cluster_config": "OnDemand ecs.sn1ne.xlarge img-ubuntu-vpc",
   "{{ project_name }}.fastqscreen.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/fastqscreen:0.12.0",
   "{{ project_name }}.mergeNum.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/gatk:v2019.01",
-  "{{ project_name }}.JI.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",
   "{{ project_name }}.screen_ref_dir": "oss://pgx-reference-data/fastq_screen_reference/",
   "{{ project_name }}.mergeNum.disk_size": "100",
-  "{{ project_name }}.JI.disk_size": "100",
   "{{ project_name }}.fastq_screen_conf": "oss://pgx-reference-data/fastq_screen_reference/fastq_screen.conf",
-  "{{ project_name }}.multiqc.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
-  "{{ project_name }}.sdf": "oss://chinese-quartet/quartet-storage-data/reference_data/GRCh38.d1.vd1.sdf/",
+  "{{ project_name }}.multiqc.cluster_config": "OnDemand bcs.b2.3xlarge img-ubuntu-vpc",
+  "{{ project_name }}.qualimap.disk_size": "500",
   "{{ project_name }}.multiqc.docker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/multiqc:v1.8",
-  "{{ project_name }}.mergeNum.cluster_config": "OnDemand ecs.sn1ne.xlarge img-ubuntu-vpc",
-  "{{ project_name }}.bamqc.cluster_config": "OnDemand ecs.sn1ne.8xlarge img-ubuntu-vpc",
-  "{{ project_name }}.vcfstat.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
-  "{{ project_name }}.JI.cluster_config": "OnDemand ecs.sn1ne.4xlarge img-ubuntu-vpc",
+  "{{ project_name }}.mergeNum.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
+  "{{ project_name }}.mergeSentieon.disk_size": "100",
+  "{{ project_name }}.sentieon.disk_size": "100",
+  "{{ project_name }}.vcfstat.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
+  "{{ project_name }}.mergeSentieon.cluster_config": "OnDemand bcs.a2.large img-ubuntu-vpc",
   "{{ project_name }}.fastqscreen.disk_size": "100",
-  "{{ project_name }}.bamqc.disk_size": "500",
   "{{ project_name }}.multiqc.disk_size": "100",
-  "{{ project_name }}.bamqc.docker": "registry.cn-shanghai.aliyuncs.com/pgx-docker-registry/qualimap:2.0.0",
   "{{ project_name }}.ref_dir": "oss://chinese-quartet/quartet-storage-data/reference_data/"
 }
-
-{
-  "project_name.benchmarking_dir": "File",
-  "project_name.vcfstat.docker": "String",
-  "project_name.qualimap.docker": "String",
-  "project_name.qualimap.cluster_config": "String",
-  "project_name.fasta": "String",
-  "project_name.fastqc.disk_size": "String",
-  "project_name.mergeSentieon.docker": "String",
-  "project_name.benchmark.cluster_config": "String",
-  "project_name.sentieon.docker": "String",
-  "project_name.fastqscreen.cluster_config": "String",
-  "project_name.fastqc.cluster_config": "String",
-  "project_name.benchmark.disk_size": "String",
-  "project_name.vcfstat.disk_size": "String",
-  "project_name.fastqc.docker": "String",
-  "project_name.sentieon.cluster_config": "String",
-  "project_name.benchmark.docker": "String",
-  "project_name.inputSamplesFile": "File",
-  "project_name.fastqscreen.docker": "String",
-  "project_name.mergeNum.docker": "String",
-  "project_name.screen_ref_dir": "File",
-  "project_name.mergeNum.disk_size": "String",
-  "project_name.fastq_screen_conf": "File",
-  "project_name.multiqc.cluster_config": "String",
-  "project_name.qualimap.disk_size": "String",
-  "project_name.sdf": "File",
-  "project_name.multiqc.docker": "String",
-  "project_name.mergeNum.cluster_config": "String",
-  "project_name.mergeSentieon.disk_size": "String",
-  "project_name.sentieon.disk_size": "String",
-  "project_name.vcfstat.cluster_config": "String",
-  "project_name.mergeSentieon.cluster_config": "String",
-  "project_name.fastqscreen.disk_size": "String",
-  "project_name.multiqc.disk_size": "String",
-  "project_name.ref_dir": "File"
-}