renluyao
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quartet_vcf_qc
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quartet_vcf_qc/inputs

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  1. {

  2.   "{{ project_name }}.benchmarking_dir": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202103/",

  3.   "{{ project_name }}.fasta": "GRCh38.d1.vd1.fa",

  4.   "{{ project_name }}.BENCHMARKdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/rtg-hap:latest",

  5.   "{{ project_name }}.LCL8": "{{ LCL8 }}",

  6.   "{{ project_name }}.disk_size": "500",

  7.   "{{ project_name }}.LCL5": "{{ LCL5 }}",

  8.   "{{ project_name }}.project": "{{ project }}",

  9.   "{{ project_name }}.SMALLcluster_config": "OnDemand bcs.ps.g.xlarge img-ubuntu-vpc",

  10.   "{{ project_name }}.bed": "oss://pgx-result/renluyao/manuscript_v3.0/reference_datasets_v202105/benchmark_regions.filtered.bed",

  11.   "{{ project_name }}.BIGcluster_config": "OnDemand bcs.ps.g.2xlarge img-ubuntu-vpc",

  12.   "{{ project_name }}.LCL6": "{{ LCL6 }}",

  13.   "{{ project_name }}.sdf": "oss://pgx-reference-data/GRCh38.d1.vd1/GRCh38.d1.vd1.sdf/",

  14.   "{{ project_name }}.contig": "oss://pgx-result/renluyao/NCTR/contig.txt",

  15.   "{{ project_name }}.MENDELIANdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/vbt:v1.1",

  16.   "{{ project_name }}.LCL7": "{{ LCL7 }}",

  17.   "{{ project_name }}.DIYdocker": "registry-vpc.cn-shanghai.aliyuncs.com/pgx-docker-registry/high_confidence_call_manuscript:v1.4",

  18.   "{{ project_name }}.ref_dir": "oss://pgx-reference-data/GRCh38.d1.vd1/"

  19. }