LUYAO REN
4 years ago
2 changed files with 10 additions and 0 deletions
+ 2
- 0
tasks/benchmark.wdl
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| File benchmarking_dir | File benchmarking_dir | ||||
| File contig | File contig | ||||
| File sdf | File sdf | ||||
| File ref_dir | |||||
| String fasta | |||||
| String project | String project | ||||
| String sample = basename(vcf,".vcf.gz") | String sample = basename(vcf,".vcf.gz") | ||||
| String docker | String docker |
+ 8
- 0
workflow.wdl
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| benchmarking_dir=benchmarking_dir, | benchmarking_dir=benchmarking_dir, | ||||
| sdf=sdf, | sdf=sdf, | ||||
| contig=contig, | contig=contig, | ||||
| ref_dir=ref_dir, | |||||
| fasta=fasta, | |||||
| project=project, | project=project, | ||||
| docker=BENCHMARKdocker, | docker=BENCHMARKdocker, | ||||
| cluster_config=BIGcluster_config, | cluster_config=BIGcluster_config, | ||||
| benchmarking_dir=benchmarking_dir, | benchmarking_dir=benchmarking_dir, | ||||
| sdf=sdf, | sdf=sdf, | ||||
| contig=contig, | contig=contig, | ||||
| ref_dir=ref_dir, | |||||
| fasta=fasta, | |||||
| project=project, | project=project, | ||||
| docker=BENCHMARKdocker, | docker=BENCHMARKdocker, | ||||
| cluster_config=BIGcluster_config, | cluster_config=BIGcluster_config, | ||||
| benchmarking_dir=benchmarking_dir, | benchmarking_dir=benchmarking_dir, | ||||
| sdf=sdf, | sdf=sdf, | ||||
| contig=contig, | contig=contig, | ||||
| ref_dir=ref_dir, | |||||
| fasta=fasta, | |||||
| project=project, | project=project, | ||||
| docker=BENCHMARKdocker, | docker=BENCHMARKdocker, | ||||
| cluster_config=BIGcluster_config, | cluster_config=BIGcluster_config, | ||||
| benchmarking_dir=benchmarking_dir, | benchmarking_dir=benchmarking_dir, | ||||
| sdf=sdf, | sdf=sdf, | ||||
| contig=contig, | contig=contig, | ||||
| ref_dir=ref_dir, | |||||
| fasta=fasta, | |||||
| project=project, | project=project, | ||||
| docker=BENCHMARKdocker, | docker=BENCHMARKdocker, | ||||
| cluster_config=BIGcluster_config, | cluster_config=BIGcluster_config, |
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