LUYAO REN
4 years ago
1 changed files with 4 additions and 1 deletions
+ 4
- 1
tasks/benchmark.wdl
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| /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg index -f vcf ${sample}.reformed.vcf.gz | /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg index -f vcf ${sample}.reformed.vcf.gz | ||||
| else | else | ||||
| echo "only for quartet samples" | echo "only for quartet samples" | ||||
| fi | |||||
| fi | |||||
| ls > filelist | |||||
| >>> | >>> | ||||
| runtime { | runtime { | ||||
| File summary = "${sample}.summary.csv" | File summary = "${sample}.summary.csv" | ||||
| File extended = "${sample}.extended.csv" | File extended = "${sample}.extended.csv" | ||||
| File metrics = "${sample}.metrics.json.gz" | File metrics = "${sample}.metrics.json.gz" | ||||
| File out_file = "filelist" | |||||
| } | } | ||||
| } | } |
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