name

tasks/benchmark.wdl

@@ -2,7 +2,7 @@ task benchmark {
 	File vcf
 	File benchmarking_dir
 	File ref_dir
-	String sample = basename(vcf,".vcf")
+	String sample = basename(vcf,"raw.vcf.gz")
 	String fasta
 	String docker
 	String cluster_config