rtg

tasks/benchmark.wdl

@@ -58,8 +58,8 @@ task benchmark {
 	output {
 		File rtg_vcf = "${project}.${sample}.rtg.vcf.gz"
 		File rtg_vcf_index = "${project}.${sample}.rtg.vcf.gz.tbi"
-		File SNV_result = "${sample}_SNV_precision_recall.txt"
-		File Indel_result = "${sample}_INDEL_precision_recall.txt"
+		File SNV_result = "${project}.${sample}_SNV_precision_recall.txt"
+		File Indel_result = "${project}.${sample}_INDEL_precision_recall.txt"
 		File file_list = "files.txt"
 	}
 }