quartet_dna_quality_control_wgs_big_pipeline/schema.json

{
  "formMode": "batch",
  "fields": [
    {
      "tmplType": "sample_id",
      "type": "number",
      "label": "Sample ID",
      "name": "sample_id",
      "question": "How many samples? For auto generating sample id.",
      "placeholder": "How many samples? For auto generating sample id.",
      "model": "sample_id",
      "disabled": false,
      "min": 1,
      "max": 100,
      "config": {
        "initialValue": 1,
        "rules": [
          {
            "type": "number",
            "required": true,
            "message": "Please input a number."
          }
        ]
      }
    },
    {
      "tmplType": "radio",
      "label": "Platform?",
      "model": "pl",
      "options": [
        {
          "label": "BGI",
          "value": "BGI"
        },
        {
          "label": "ILLUMINA",
          "value": "ILLUMINA"
        }
      ],
      "config": {
        "rules": [
          {
            "type": "string",
            "required": true,
            "message": "Please select a platform."
          }
        ]
      }
    },
    {
      "tmplType": "radio",
      "label": "FASTQ/VCF File?",
      "model": "fastq_or_vcf",
      "options": [
        {
          "label": "FASTQ",
          "value": "fastq"
        },
        {
          "label": "VCF",
          "value": "vcf"
        }
      ],
      "config": {
        "rules": [
          {
            "type": "string",
            "required": true,
            "message": "Please select a file type."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D5 VCF Files",
      "model": "vcf_D5",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "vcf",
      "filterType": "vcf",
      "placeholder": "Select files for D5 vcf.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D5 vcf."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D5 Read1 Files",
      "model": "fastq_1_D5",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for D5 read1.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D5 read1."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D5 Read2 Files",
      "model": "fastq_2_D5",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for D5 read2.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D5 read2."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D6 VCF Files",
      "model": "vcf_D6",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "vcf",
      "filterType": "vcf",
      "placeholder": "Select files for D6 vcf.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D6 vcf."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D6 Read1 Files",
      "model": "fastq_1_D6",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for D6 read1.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D6 read1."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "D6 Read2 Files",
      "model": "fastq_2_D6",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for D6 read2.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for D6 read2."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "F7 VCF Files",
      "model": "vcf_F7",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "vcf",
      "filterType": "vcf",
      "placeholder": "Select files for F7 vcf.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for F7 vcf."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "F7 Read1 Files",
      "model": "fastq_1_F7",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for F7 read1.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for F7 read1."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "F7 Read2 Files",
      "model": "fastq_2_F7",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for F7 read2.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for F7 read2."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "M8 VCF Files",
      "model": "vcf_M8",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "vcf",
      "filterType": "vcf",
      "placeholder": "Select files for M8 vcf.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for M8 vcf."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "M8 Read1 Files",
      "model": "fastq_1_M8",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for M8 read1.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for M8 read1."
          }
        ]
      }
    },
    {
      "tmplType": "file",
      "label": "M8 Read2 Files",
      "model": "fastq_2_M8",
      "readOnly": false,
      "multiple": true,
      "visibleVariable": "fastq_or_vcf",
      "expectedValue": "fastq",
      "filterType": "_R[12].fastq.gz|_R[12].fq.gz",
      "placeholder": "Select files for M8 read2.",
      "config": {
        "rules": [
          {
            "type": "array",
            "required": true,
            "message": "Please select files for M8 read2."
          }
        ]
      }
    },
    {
      "tmplType": "actions",
      "buttons": [
        {
          "type": "cancel",
          "buttonType": "default",
          "buttonLabel": "Previous Step"
        },
        {
          "type": "submit",
          "buttonType": "primary",
          "buttonLabel": "Next Step",
          "validate": true
        }
      ]
    }
  ]
}