benchmark

workflow.wdl

@@ -211,7 +211,7 @@ workflow {{ project_name }} {
 
 		call benchmark.benchmark as benchmark_D5 {
 			input:
-			vcf=filter_vcf_bed_D5.filtered_vcf,
+			filtered_vcf=filter_vcf_bed_D5.filtered_vcf,
 			benchmarking_dir=benchmarking_dir,
 			ref_dir=ref_dir,
 			qc_bed=filter_vcf_bed_D5.filtered_bed,
@@ -362,7 +362,7 @@ workflow {{ project_name }} {
 
 		call benchmark.benchmark as benchmark_D6 {
 			input:
-			vcf=filter_vcf_bed_D6.filtered_vcf,
+			filtered_vcf=filter_vcf_bed_D6.filtered_vcf,
 			benchmarking_dir=benchmarking_dir,
 			ref_dir=ref_dir,
 			qc_bed=filter_vcf_bed_D6.filtered_bed,
@@ -513,7 +513,7 @@ workflow {{ project_name }} {
 
 		call benchmark.benchmark as benchmark_F7 {
 			input:
-			vcf=filter_vcf_bed_F7.filtered_vcf,
+			filtered_vcf=filter_vcf_bed_F7.filtered_vcf,
 			benchmarking_dir=benchmarking_dir,
 			ref_dir=ref_dir,
 			qc_bed=filter_vcf_bed_F7.filtered_bed,
@@ -664,7 +664,7 @@ workflow {{ project_name }} {
 
 		call benchmark.benchmark as benchmark_M8 {
 			input:
-			vcf=filter_vcf_bed_M8.filtered_vcf,
+			filtered_vcf=filter_vcf_bed_M8.filtered_vcf,
 			benchmarking_dir=benchmarking_dir,
 			ref_dir=ref_dir,
 			qc_bed=filter_vcf_bed_M8.filtered_bed,