LUYAO REN
2 years ago
2 changed files with 12 additions and 12 deletions
+ 8
- 8
tasks/rename_fastq.wdl
View File
| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| mv ${fastq_1_D5} ${fastq_1_D5_name}_${project}_LCL5_R1.fastq.gz | |||||
| mv ${fastq_1_D6} ${fastq_1_D6_name}_${project}_LCL6_R1.fastq.gz | |||||
| mv ${fastq_1_F7} ${fastq_1_F7_name}_${project}_LCL7_R1.fastq.gz | |||||
| mv ${fastq_1_M8} ${fastq_1_M8_name}_${project}_LCL8_R1.fastq.gz | |||||
| mv ${fastq_2_D5} ${fastq_2_D5_name}_${project}_LCL5_R2.fastq.gz | |||||
| mv ${fastq_2_D6} ${fastq_2_D6_name}_${project}_LCL6_R2.fastq.gz | |||||
| mv ${fastq_2_F7} ${fastq_2_F7_name}_${project}_LCL7_R2.fastq.gz | |||||
| mv ${fastq_2_M8} ${fastq_2_M8_name}_${project}_LCL8_R2.fastq.gz | |||||
| cp ${fastq_1_D5} ${fastq_1_D5_name}_${project}_LCL5_R1.fastq.gz | |||||
| cp ${fastq_1_D6} ${fastq_1_D6_name}_${project}_LCL6_R1.fastq.gz | |||||
| cp ${fastq_1_F7} ${fastq_1_F7_name}_${project}_LCL7_R1.fastq.gz | |||||
| cp ${fastq_1_M8} ${fastq_1_M8_name}_${project}_LCL8_R1.fastq.gz | |||||
| cp ${fastq_2_D5} ${fastq_2_D5_name}_${project}_LCL5_R2.fastq.gz | |||||
| cp ${fastq_2_D6} ${fastq_2_D6_name}_${project}_LCL6_R2.fastq.gz | |||||
| cp ${fastq_2_F7} ${fastq_2_F7_name}_${project}_LCL7_R2.fastq.gz | |||||
| cp ${fastq_2_M8} ${fastq_2_M8_name}_${project}_LCL8_R2.fastq.gz | |||||
| >>> | >>> | ||||
+ 4
- 4
tasks/rename_vcf.wdl
View File
| String disk_size | String disk_size | ||||
| command <<< | command <<< | ||||
| mv ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| mv ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| mv ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| mv ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| cp ${vcf_D5} ${vcf_D5_name}_${project}_LCL5.vcf | |||||
| cp ${vcf_D6} ${vcf_D6_name}_${project}_LCL6.vcf | |||||
| cp ${vcf_F7} ${vcf_F7_name}_${project}_LCL7.vcf | |||||
| cp ${vcf_M8} ${vcf_M8_name}_${project}_LCL8.vcf | |||||
| >>> | >>> | ||||
| runtime { | runtime { |
Loading…