LUYAO REN
hace 4 años
Se han modificado 2 ficheros con 2 adiciones y 1 borrados
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codescripts/extract_multiqc.py
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| dat = dat.loc[:, dat.columns.str.endswith('ALL')] | dat = dat.loc[:, dat.columns.str.endswith('ALL')] | ||||
| dat_transposed = dat.T | dat_transposed = dat.T | ||||
| benchmark = dat_transposed.loc[:,['sample_id','METRIC.Precision','METRIC.Recall']] | benchmark = dat_transposed.loc[:,['sample_id','METRIC.Precision','METRIC.Recall']] | ||||
| benchmark['sample_id'] = benchmark.index | |||||
| benchmark.columns = ['Sample','Precision','Recall'] | benchmark.columns = ['Sample','Precision','Recall'] | ||||
| #output | #output |
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tasks/D5_D6.wdl
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| sample_j=$(echo $j | cut -f7 -d_) | sample_j=$(echo $j | cut -f7 -d_) | ||||
| rep_i=$(echo $i | cut -f8 -d_) | rep_i=$(echo $i | cut -f8 -d_) | ||||
| rep_j=$(echo $j | cut -f8 -d_) | rep_j=$(echo $j | cut -f8 -d_) | ||||
| if [[ $sample_i == "LCL5" ] && [ $sample_j == "LCL6" ] && [ $rep_i == $rep_j ]];then | |||||
| if [ $sample_i == "LCL5" ] && [ $sample_j == "LCL6" ] && [ $rep_i == $rep_j ];then | |||||
| cat $i | grep -v '##' | cut -f1,2,4,5,10 | cut -d ':' -f1 > LCL5.txt | cat $i | grep -v '##' | cut -f1,2,4,5,10 | cut -d ':' -f1 > LCL5.txt | ||||
| cat $j | grep -v '##' | cut -f10 | cut -d ':' -f1 > LCL6.txt | cat $j | grep -v '##' | cut -f10 | cut -d ':' -f1 > LCL6.txt | ||||
| paste LCL5.txt LCL6.txt > sister.txt | paste LCL5.txt LCL6.txt > sister.txt |
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