> | > | ||||
> Git: http://choppy.3steps.cn/renluyao/WGS_germline_datapotal.git | > Git: http://choppy.3steps.cn/renluyao/WGS_germline_datapotal.git | ||||
> | > | ||||
> Last Updates: 2020/07/05 | |||||
> Last Updates: 2020/11/25 | |||||
## 安装指南 | ## 安装指南 | ||||
``` | ``` | ||||
# 激活choppy环境 | # 激活choppy环境 | ||||
source activate choppy | |||||
open-choppy-env | |||||
# 安装app | # 安装app | ||||
choppy install renluyao/WGS_germline_datapotal | choppy install renluyao/WGS_germline_datapotal | ||||
``` | ``` |
command <<< | command <<< | ||||
python /opt/extract_tables.py -quality ${quality_yield_summary} -depth ${wgs_metrics_summary} -aln ${aln_metrics_summary} -is ${is_metrics_summary} -fastqc ${fastqc} -fastqscreen ${fastqscreen} -hap ${hap} -project ${projecg} | |||||
python /opt/extract_tables.py -quality ${quality_yield_summary} -depth ${wgs_metrics_summary} -aln ${aln_metrics_summary} -is ${is_metrics_summary} -fastqc ${fastqc} -fastqscreen ${fastqscreen} -hap ${hap} -project ${project} | |||||
>>> | >>> | ||||