task vcfstat { File rtg_vcf File rtg_vcf_index String sample_name String docker String cluster_config String disk_size command <<< set -o pipefail set -e /opt/rtg-tools/dist/rtg-tools-3.10.1-4d58ead/rtg vcfstats ${rtg_vcf} > ${sample_name}.stats.txt >>> runtime { docker:docker cluster:cluster_config systemDisk:"cloud_ssd 40" dataDisk:"cloud_ssd " + disk_size + " /cromwell_root/" } output { File vcfnumber="${sample_name}.stats.txt" } }