File read2 | File read2 | ||||
File screen_ref_dir | File screen_ref_dir | ||||
File fastq_screen_conf | File fastq_screen_conf | ||||
String read1name = basename(read1,".fastq.gz") | |||||
String read2name = basename(read2,".fastq.gz") | |||||
String read1name=sub(basename(read1),"\\.\\S+$", "") | |||||
String read2name=sub(basename(read2),"\\.\\S+$", "") | |||||
String docker | String docker | ||||
String cluster_config | String cluster_config | ||||
String disk_size | String disk_size |