remove multiqc

workflow.wdl

@@ -9,7 +9,7 @@ import "./tasks/Haplotyper_gVCF.wdl" as Haplotyper_gVCF
 import "./tasks/GVCFtyper.wdl" as GVCFtyper
 import "./tasks/split_gvcf_files.wdl" as split_gvcf_files
 import "./tasks/benchmark.wdl" as benchmark
-import "./tasks/multiqc.wdl" as multiqc
+# import "./tasks/multiqc.wdl" as multiqc
 import "./tasks/merge_sentieon_metrics.wdl" as merge_sentieon_metrics
 import "./tasks/extract_tables.wdl" as extract_tables
 import "./tasks/mendelian.wdl" as mendelian
@@ -222,18 +222,18 @@ workflow {{ project_name }} {
 
 	}
 
-	call multiqc.multiqc as multiqc {
-		input:
-		read1_zip=fastqc.read1_zip,
-		read2_zip=fastqc.read2_zip,
-		txt1=fastqscreen.txt1,
-		txt2=fastqscreen.txt2,
-		summary=benchmark.summary,
-		zip=qualimap.zip,
-		docker=MULTIQCdocker,
-		cluster_config=SMALLcluster_config,
-		disk_size=disk_size
-	}
+#	call multiqc.multiqc as multiqc {
+#		input:
+#		read1_zip=fastqc.read1_zip,
+#		read2_zip=fastqc.read2_zip,
+#		txt1=fastqscreen.txt1,
+#		txt2=fastqscreen.txt2,
+#		summary=benchmark.summary,
+#		zip=qualimap.zip,
+#		docker=MULTIQCdocker,
+#		cluster_config=SMALLcluster_config,
+#		disk_size=disk_size
+#	}
 
 	call merge_sentieon_metrics.merge_sentieon_metrics as merge_sentieon_metrics {
 		input: