stop multiqc

tasks/fastqscreen.wdl

@@ -23,6 +23,7 @@ task fastq_screen {
 		systemDisk: "cloud_ssd 40"
 		dataDisk: "cloud_ssd " + disk_size + " /cromwell_root/"
 	}
+	
 	output {
 		File png1 = sub(basename(read1), "\\.(fastq|fq)\\.gz$", "_screen.png")
 		File txt1 = sub(basename(read1), "\\.(fastq|fq)\\.gz$", "_screen.txt")

workflow.wdl

@@ -222,18 +222,18 @@ workflow {{ project_name }} {
 
 	}
 
-	call multiqc.multiqc as multiqc {
-		input:
-		read1_zip=fastqc.read1_zip,
-		read2_zip=fastqc.read2_zip,
-		txt1=fastqscreen.txt1,
-		txt2=fastqscreen.txt2,
-		summary=benchmark.summary,
-		zip=qualimap.zip,
-		docker=MULTIQCdocker,
-		cluster_config=SMALLcluster_config,
-		disk_size=disk_size
-	}
+#	call multiqc.multiqc as multiqc {
+#		input:
+#		read1_zip=fastqc.read1_zip,
+#		read2_zip=fastqc.read2_zip,
+#		txt1=fastqscreen.txt1,
+#		txt2=fastqscreen.txt2,
+#		summary=benchmark.summary,
+#		zip=qualimap.zip,
+#		docker=MULTIQCdocker,
+#		cluster_config=SMALLcluster_config,
+#		disk_size=disk_size
+#	}
 
 	call merge_sentieon_metrics.merge_sentieon_metrics as merge_sentieon_metrics {
 		input: