quartet-wes-germline-data-generation-qc/inputs

{
  "{{ project_name }}.benchmarking_dir": "{{ benchmarking_dir }}",
  "{{ project_name }}.SENTIEON_INSTALL_DIR": "{{ SENTIEON_INSTALL_DIR }}",
  "{{ project_name }}.fasta": "{{ fasta }}",
  "{{ project_name }}.BENCHMARKdocker": "{{ BENCHMARKdocker }}",
  "{{ project_name }}.dbsnp_dir": "{{ dbsnp_dir }}",
  "{{ project_name }}.BEDTOOLSdocker": "{{ BEDTOOLSdocker }}",
  "{{ project_name }}.disk_size": "{{ disk_size }}",
  "{{ project_name }}.inputSamplesFile": "{{ inputSamplesFile }}",
  "{{ project_name }}.FASTQCdocker": "{{ FASTQCdocker }}",
  "{{ project_name }}.MULTIQCdocker": "{{ MULTIQCdocker }}",
  "{{ project_name }}.project": "{{ project }}",
  "{{ project_name }}.SMALLcluster_config": "{{ SMALLcluster_config }}",
  "{{ project_name }}.screen_ref_dir": "{{ screen_ref_dir }}",
  "{{ project_name }}.bed": "{{ bed }}",
  "{{ project_name }}.dbmills_dir": "{{ dbmills_dir }}",
  "{{ project_name }}.BIGcluster_config": "{{ BIGcluster_config }}",
  "{{ project_name }}.fastq_screen_conf": "{{ fastq_screen_conf }}",
  "{{ project_name }}.FASTQSCREENdocker": "{{ FASTQSCREENdocker }}",
  "{{ project_name }}.SENTIEON_LICENSE": "{{ SENTIEON_LICENSE }}",
  "{{ project_name }}.SENTIEONdocker": "{{ SENTIEONdocker }}",
  "{{ project_name }}.QUALIMAPdocker": "{{ QUALIMAPdocker }}",
  "{{ project_name }}.benchmark_region": "{{ benchmark_region }}",
  "{{ project_name }}.db_mills": "{{ db_mills }}",
  "{{ project_name }}.dbsnp": "{{ dbsnp }}",
  "{{ project_name }}.MENDELIANdocker": "{{ MENDELIANdocker }}",
  "{{ project_name }}.DIYdocker": "{{ DIYdocker }}",
  "{{ project_name }}.ref_dir": "{{ ref_dir }}"
}