You can not select more than 25 topics
Topics must start with a letter or number, can include dashes ('-') and can be up to 35 characters long.
LUYAO REN
155cafe7f9
sentieon quality yeild
|
пре 4 година | |
|---|---|---|
| .. | ||
| .gitignore | пре 4 година | |
| LICENSE | пре 4 година | |
| README.md | пре 4 година | |
| fastq.py | пре 4 година | |
| q30.py | пре 4 година | |
README.md
q30
A simple script to calculate q20/q30 percentages of a fastq file (can be gzipped)
python q30.py <fastq_file_name>
output
('total bases:', 1386659)
('q20 bases:', 1280980)
('q30 bases:', 1232024)
('q20 percents:', 92.37887613320939)
('q30 percents:', 88.84837584438567)
Time used: 0.221389055252